Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs7562367 | chr2:48032613 | G/A | 4.67E-5 | 473 | 15.65 | 14.93 | 16.65 | KM Plot |
| THCA | rs75639018 | chr4:84630892 | T/A | 5.88E-6 | 483 | 16.2 | 12.7 | 18.47 | KM Plot |
| THCA | rs75641486 | chr6:153314479 | G/GA | 5.44E-5 | 482 | 15.17 | 17.83 | 10.45 | KM Plot |
| THCA | rs75663630 | chr14:59772068 | C/A | 1.38E-8 | 487 | 16.37 | 14.1 | 5.45 | KM Plot |
| THCA | rs7566525 | chr2:48352530 | G/A | 1.27E-5 | 482 | 14.85 | 17.47 | 14.47 | KM Plot |
| THCA | rs7567197 | chr2:54599685 | A/G | 0.000138 | 483 | 16.63 | 15.03 | 16.08 | KM Plot |
| THCA | rs75691516 | chr10:104652045 | C/T | 2.9E-8 | 488 | 15.48 | 17.33 | 19.1 | KM Plot |
| THCA | rs7569845 | chr2:237972821 | A/G | 0.000129 | 490 | 16.48 | 16.57 | 15.67 | KM Plot |
| THCA | rs7570629 | chr2:55255935 | A/T | 0.000168 | 481 | 12.5 | 16.2 | 17.73 | KM Plot |
| THCA | rs75712133 | chr9:132295807 | T/C | 0 | 488 | 16.13 | 15.08 | 9.57 | KM Plot |
| THCA | rs7573411 | chr2:29050053 | G/A | 9.62E-5 | 489 | 15.93 | 17.08 | 14.3 | KM Plot |
| THCA | rs75750517 | chr8:52443135 | G/T | 0 | 485 | 16.48 | 14.67 | 7.3 | KM Plot |
| THCA | rs7579337 | chr2:201956855 | C/T | 0.000155 | 482 | 16.07 | 15.83 | 5.07 | KM Plot |
| THCA | rs75796937 | chr8:52443981 | C/G | 0 | 488 | 16.4 | 14.55 | 7.3 | KM Plot |
| THCA | rs75797082 | chr11:26649243 | T/C | 0.00029 | 489 | 15.77 | 16.62 | 9 | KM Plot |